species:   Artha
pid:       MI0005103
parent:    ath-MIR773a
paralog:   
locus:     1:13067251-13067335
matures:   ['UUUGCUUCCAGCUUUUGUCUC', 'GGCAAUAGCUUGAGCAAAUA']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 1:13067251-13067335

3 out of bounds
109 alignments
109 proper strand
75 stranded perfect matches

 ***********************                                    ************************ 
AGGAGGCAAUAGCUUGAGCAAAUAAUUGAUUGCAGAAGUCCAUCGACUAAAGCUGUCACCUGUUUGCUUCCAGCUUUUGUCUCCU
(((((((((.((((.(((((((((..((((.((...((((....))))...)).))))..)))))))))..)))).)))))))))
--------------------------------------------------------------UUUGCUUCCAGCUUUUGUCUC-- l=21 a=0 c
----GGCAAUAGCUUGAGCAAAUA------------------------------------------------------------- l=20 a=0 c*
--------------------------------------------------------------UUUGCUUCCAGCUUUUGUCUCC- l=22 a=69 ma
---AGGCAAUAGCUUGAGCAAAUA------------------------------------------------------------- l=21 a=1 ma*

---AGGCAAUAGCUUGAGCAAAUA------------------------------------------------------------- l=21 a=1 (ma*)
--------------------------------------------------------------UUUGCUUCCAGCUUUUGU----- l=18 a=1 
--------------------------------------------------------------UUUGCUUCCAGCUUUUGUCUCu- l=22 a=24 
--------------------------------------------------------------UUUGCUUCCAGCUUUUGUCUCC- l=22 a=69 (ma)
--------------------------------------------------------------UUUGCUUCCAGCUUUUGUCUCa- l=22 a=7 
--------------------------------------------------------------UUUGCUUCCAGCUUUcGUCUCC- l=22 a=1 
---------------------------------------------------------------UUGCUUCCAGCUUUUGUCUCa- l=21 a=2 
---------------------------------------------------------------UUGCUUCCAGCUUUUGUCUCC- l=21 a=4 

mb-01111
ax-1111011
ku-01
ss-111111111111
fn-111
